{"id":32,"date":"2020-04-15T04:49:18","date_gmt":"2020-04-15T03:49:18","guid":{"rendered":"http:\/\/cpedb.mardi.gov.my\/?page_id=32"},"modified":"2025-03-02T04:52:07","modified_gmt":"2025-03-02T04:52:07","slug":"about-us","status":"publish","type":"page","link":"http:\/\/cpedb.mardi.gov.my\/?page_id=32","title":{"rendered":"About Us"},"content":{"rendered":"\r\n<p><strong>PapayaNetBase<\/strong>\u00a0is a repository of genomics and genetics information for <em>Carica papaya<\/em> cultivar Eksotika. <strong>PapayaNetBase <\/strong>integrates the Eksotika, Sekaki and other papaya genome information (i.e. genes, proteins, metabolites, pathways, SNPs and SSRs) that were generated and annotated using next generation sequencing technology and bioinformatics approaches. <b>PapayaNetBase <\/b>aims to provide a valuable resource the papaya research community by enabling molecular biologist, geneticist and breeder to mine and export the genomics and genetics information of <em>Carica papaya<\/em> for the application in the papaya breeding programme, towards the improvement of agronomically traits in papaya varieties.<\/p>\r\n\r\n\r\n\r\n<p class=\"has-text-color has-background has-text-align-left\" style=\"background-color: #8fbc8f; color: #ffffff;\"><strong>Frequently Asked Questions (FAQs)<\/strong><\/p>\r\n\r\n\r\n\r\n<p><strong>What data and information does PapayaNetBase\u00a0contain?<br \/><\/strong>The current data in <span style=\"color: #8bb560;\"><strong>PapayaNetBase<\/strong><\/span> are:<\/p>\r\n\r\n\r\n\r\n\r\n\r\n<ol class=\"wp-block-list\">\r\n<li>Contigs and scaffolds built from the assembly of Eksotika papaya genome.<\/li>\r\n<li>Annotated genes and protein sequences of Eksotika and Sekaki papaya.<\/li>\r\n<li>Gene ontology and pathway of annotated Eksotika and Sekaki papaya.<\/li>\r\n<li>Putative SSRs, SNPs and InDELs from genome of Eksotika and Sekaki papaya.<\/li>\r\n<li>Metabolites data of Eksotika papaya.<\/li>\r\n<li>Resistance and effector genes associated with papaya dieback disease.<\/li>\r\n<li>Gene-trait relationships in knowledge graph visualisation.<\/li>\r\n<\/ol>\r\n\r\n\r\n\r\n\r\n\r\n<p><strong>How is PapayaNetBase<em>\u00a0<\/em>supported?<br \/><\/strong><strong>PapayaNetBase<\/strong> is funded by MARDI<\/p>\r\n\r\n\r\n\r\n\r\n\r\n<p><strong>How do I cite PapayaNetBase?<br \/><\/strong>A manuscript of this database is in progress for submission to journal. For now please use the URL for the citation purpose.<\/p>\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n<p><strong>How can I contact PapayaNetBase\u00a0person?<br \/><\/strong><strong>PapayaNetBase<\/strong> team can be reached via this email: rabiatul[at]mardi.gov.my<\/p>\r\n\r\n\r\n\r\n\r\n\r\n<p class=\"has-text-color has-background\" style=\"background-color: #8fbc8f; color: #ffffff;\"><strong>Disclaimers<\/strong><\/p>\r\n\r\n\r\n\r\n<ul class=\"wp-block-list\">\r\n<li>Access to raw reads can be obtained from ENA database (https:\/\/www.ebi.ac.uk\/ena) under accession number: <a href=\"https:\/\/www.ebi.ac.uk\/ena\/data\/view\/PRJEB24969\" target=\"_blank\" rel=\"noreferrer noopener\">PRJEB24969<\/a><\/li>\r\n<li>Eksotika genome remains work in progress, please respect this and treat the data accordingly.<\/li>\r\n<li>If you wish to contribute or collaborate, please get in touch.<\/li>\r\n<li>Any use of the data must include an acknowledgement of the group and cite using the website URL.<\/li>\r\n<li>We hope you find these data useful and are looking forward to hearing about how it assisted your analyses.<\/li>\r\n<\/ul>\r\n","protected":false},"excerpt":{"rendered":"<p>PapayaNetBase\u00a0is a repository of genomics and genetics information for Carica papaya cultivar Eksotika. PapayaNetBase integrates the Eksotika, Sekaki and other papaya genome information (i.e. genes, proteins, metabolites, pathways, SNPs and &hellip; <\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-32","page","type-page","status-publish","hentry","latest_post"],"_links":{"self":[{"href":"http:\/\/cpedb.mardi.gov.my\/index.php?rest_route=\/wp\/v2\/pages\/32","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/cpedb.mardi.gov.my\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/cpedb.mardi.gov.my\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/cpedb.mardi.gov.my\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/cpedb.mardi.gov.my\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=32"}],"version-history":[{"count":18,"href":"http:\/\/cpedb.mardi.gov.my\/index.php?rest_route=\/wp\/v2\/pages\/32\/revisions"}],"predecessor-version":[{"id":390,"href":"http:\/\/cpedb.mardi.gov.my\/index.php?rest_route=\/wp\/v2\/pages\/32\/revisions\/390"}],"wp:attachment":[{"href":"http:\/\/cpedb.mardi.gov.my\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=32"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}